USING AUTODOCK 4 AND VINA WITH AUTODOCKTOOLS: A TUTORIAL. This file will contain docking parameters and instructions for. This tutorial will introduce you to docking using the AutoDock suite of programs This file will contain docking parameters and instructions for. AutoGrid, and then docking can be done by AutoDock. The newest docking is now shown with all the assigned charges, and they could be changed manually.

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To display the available command line arguments type “vina –help”. On a typical modern workstation, Vina should often be able to reliably generate the predicted binding modes and affinities of a ligand in seconds to minutes, depending on the ligand complexity.


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